[Bioperl-l] How to change gap open penalty
Julio Fernández Banet
julipao at terra.es
Mon Aug 23 16:28:34 EDT 2004
Hello.
i would like to know if it is posible to change the gap open penalty
value of bl2seq.
My code looks like this:
# Run bl2seq with the two sequences
$factory=Bio::Tools::Run::StandAloneBlast->new('program'=>'blastn',
'G'=>'0' ,'outfile'=>"$Seq.out");
my $bl2seq_report=$factory->bl2seq($Seq1, $Seq2);
But it seems that it doesn't not work. any suggestion????
Thanks
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