[Bioperl-l] (RNAfold)Convert bracktes structure to aligned like tructure

[Yousef Malik]

  Hi
  I would like to get your help on the following problem:
  How could one convert the output of RNAfold within the brackets structure
  GGCCAGUGUUGAGAGGCGGAGACUUGGGCAAUUGCUGGACGCUGCCCUGGGCAUUGCACUUGUCUCGGUCUGACAGUGCCGGCC
  ((((.((..((..((((.(((((..(((((((.(((((.......))..)))))))).)).))))).))))..))..)).))))
  (-36.00)

  To aligned like structure:
     A UG   AG    G     UU G     U   --  AC
  GGCC G  UUG  AGGC GAGAC  G GCAAU GCU  GG  G
  |||| |  |||  |||| |||||  | ||||| |||  ||  C
  CCGG C  GAC  UCUG CUCUG  C CGUUA CGG  CC  U
     C GU   AG    G     UU A     -   GU  CG

  Please reply to yousef at cs.haifa.ac.il
  Reagrds
  Malik