[Bioperl-l] Re: blast2gff.pl

[Jack Chen]

There is a script bp_search2gff.pl by Jason.

Jack        


On Mon, 16 Aug 2004, Lincoln Stein wrote:

> Hi Justin,
> 
> You know, I was absolutely sure that bioperl had a blast2gff script, 
> but I can't find it.  So please send me your script and I will add it 
> in.  Just make sure that the script has some POD documentation so 
> that I don't have to write it!
> 
> Lincoln
> 
> 
> On Monday 16 August 2004 02:42 am, you wrote:
> > Hi Lincoln,
> > Don't know if you remember me, I interviewed up at
> > CSHL last year.
> >
> > I've been helping out with the Honey Bee Genome
> > Project, and found it necessary to write a perl hack
> > to turn BLAST result files into .gff files. Not sure
> > if bioperl already has such a script, but I thought I
> > would pass along mine in case it might be useful to
> > others who use GBROWSE. It's beta code, and probably
> > has a bug or two lurking. If you think it might be
> > useful, I could go through it more thoroughly and
> > refine it.
> >
> > Best regards,
> > Justin Reese
> >
> >
> >
> > __________________________________
> > Do you Yahoo!?
> > Yahoo! Mail is new and improved - Check it out!
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> 
> -- 
> Lincoln D. Stein
> Cold Spring Harbor Laboratory
> 1 Bungtown Road
> Cold Spring Harbor, NY 11724
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