[Bioperl-l] Re: blast2gff.pl

[Lincoln Stein]

Ah, that was it!  In any case, Justin, please send your script - I'm 
sure it will find use.

Lincoln

On Monday 16 August 2004 05:45 pm, Jack Chen wrote:
> There is a script bp_search2gff.pl by Jason.
>
> Jack
>
> On Mon, 16 Aug 2004, Lincoln Stein wrote:
> > Hi Justin,
> >
> > You know, I was absolutely sure that bioperl had a blast2gff
> > script, but I can't find it.  So please send me your script and I
> > will add it in.  Just make sure that the script has some POD
> > documentation so that I don't have to write it!
> >
> > Lincoln
> >
> > On Monday 16 August 2004 02:42 am, you wrote:
> > > Hi Lincoln,
> > > Don't know if you remember me, I interviewed up at
> > > CSHL last year.
> > >
> > > I've been helping out with the Honey Bee Genome
> > > Project, and found it necessary to write a perl hack
> > > to turn BLAST result files into .gff files. Not sure
> > > if bioperl already has such a script, but I thought I
> > > would pass along mine in case it might be useful to
> > > others who use GBROWSE. It's beta code, and probably
> > > has a bug or two lurking. If you think it might be
> > > useful, I could go through it more thoroughly and
> > > refine it.
> > >
> > > Best regards,
> > > Justin Reese
> > >
> > >
> > >
> > > __________________________________
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> >
> > --
> > Lincoln D. Stein
> > Cold Spring Harbor Laboratory
> > 1 Bungtown Road
> > Cold Spring Harbor, NY 11724
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l

-- 
Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724