[Bioperl-l] seq() method of Bio::Seq module
Jack Chen
chenn at cshl.edu
Thu Aug 12 22:47:43 EDT 2004
Hi,
Is there a way to preserve the original sequence format we seq() is used
to print the string of sequence? Say,
#original sequence
>ABC
aaaaaaaaaaaaaaaaaa
cccccccccccccccccc
gggggggggggggggggg
tttttttttttttttttt
When I print the string of this sequence using seq() method in Bio::Seq
module, I get:
>ABC
aaaaaaaaaaaaaaaaaaccccccccccccccccccggggggggggggggggggggtttttttttttttttt
tt
(all spaces and newlines are removed)
How can I get the original sequence back:
>ABC
aaaaaaaaaaaaaaaaaa
cccccccccccccccccc
gggggggggggggggggg
tttttttttttttttttt
?
Thanks,
Jack
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