[Bioperl-l] Re: [SO-devel] existing obo parser in perl?

Chris Mungall cjm at fruitfly.org
Thu Aug 12 03:37:28 EDT 2004


Yes, you need to download the go-perl library (get it from sf cvs)

www.godatabase.org/dev

the parser throws xml events which you can catch, or you can use the
default handler which builds graphy objects

i recall promising hilmar i'd look at adding a parser to bioperl but i
haven't managed to do this yet

On Wed, 11 Aug 2004, Allen Day wrote:

> is there a perl implementation of OBO format parsing? described here:
>
> http://www.geneontology.org/GO.format.html#oboflat
>
> -allen
>
>
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