[Bioperl-l] parsing FASTA output

[Aaron J. Mackey]

If you send me a file that fails, I should be able to fix it.

-Aaron

On Aug 9, 2004, at 11:23 PM, Yin Yanbin wrote:

> Hello,
>
> I wrote a script to parse several tFASTY search results. For some 
> input files, it works well, but for others it crashed and gave out the 
> following warnings:
>
>
> -------------------- WARNING ---------------------
> MSG: Unrecognized alignment line (3) ' statistics sampled from 60000 
> to 665286 sequences'
> ---------------------------------------------------
> Modification of non-creatable array value attempted, subscript -3 at 
> /usr/local/lib/perl5/site_perl/5.6.1/Bio/SearchIO/fasta.pm line 348, 
> <GEN1> line 229825.
>
>
> I updated my bioperl system, but it still compained.
>
> Did anyone could help me with this? Thanks in advance!