[Bioperl-l] Problems using a pers\l script to connect to GenBank

[Jason Stajich]

Case MatTers...

Try:
get_Seq_by_id()

-jason
On Thu, 5 Aug 2004, Bill Herbert wrote:

> Hi All,
>
> This may be an elementary problem but it's giving me fits!
>
> I'm trying to connect to GenBank using the following script:
>
> use Bio::Perl;
> use Bio::DB::GenBank;
> $gb = new Bio::DB::GenBank();
> $seq = $gb->get_seq_by_id('MUSIGBa1');
>
> Bioperl and Bundle are installed, and the file GenBank.pm is installed at perl\lib\Bio\DB, but when I execute this script I get the message:
> Can't locate object method "get_seq_by_id" via package "Bio::DB::GenBank."
>
> Any suggestions?
>
> Thanks a million for any help.
> Bill
>
>
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>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu