[Bioperl-l] organism restricted blast search

[Paulo Almeida]

Pedro,

You need to add a parameter like this:

$Bio::Tools::Run::RemoteBlast::HEADER{'ENTREZ_QUERY'} = 'Homo sapiens [ORGN]';


For more information, read the synopsis here:

http://search.cpan.org/~birney/bioperl/Bio/Tools/Run/RemoteBlast.pm

-Paulo

Pedro Antonio Reche wrote:

> Hi,
> I am interested in carrying out a blast (or parse a blast search) in a 
> way that only hits from a given organism will show. This is similar to 
> what the NCBI blast site does currently I wonder if someone knows how 
> to do it using bioperl. Thanks in advance for any help.
> Cheers