[Bioperl-l] bioperl is not playing nice with DProf on aix

[Mike Cariaso]

sorry I missed the bt on first read.

(gdb) bt
#0  0x110220a30 in ?? () from (unknown load module)
Cannot access memory at address 0x1102208f0







--- "Aaron J. Mackey" <amackey at pcbi.upenn.edu> wrote:

> 
> If you fire up gdb like so:
> 
> % gdb /usr/local/bin/perl core
> % bt
> 
> What do you get?
> 
> -Aaron
> 
> On Aug 3, 2004, at 5:24 PM, Mike Cariaso wrote:
> 
> > Don't you hate it when someone asks a question and
> > then includes pages of code? What you really need
> is a
> > small, tight example which can easily reproduce
> the
> > problem. Ok, I've trimmed this down as much as I
> > could.
> >
> > Here is the problem:
> >
> >> cat f2.pl
> > use Bio::SeqIO;
> > print "hello world\n";
> >
> >> /usr/local/bin/perl -d:DProf f2.pl
> > Illegal instruction (core dumped)
> >
> >
> >
> > To put that in some context...
> >
> >
> >> cat f1.pl
> > print "hello world\n";
> >
> >> /usr/local/bin/perl -d:DProf f1.pl
> > hello world
> >
> >> cat f2.pl
> > use Bio::SeqIO;
> > print "hello world\n";
> >
> >> /usr/local/bin/perl -d:DProf f2.pl
> > Illegal instruction (core dumped)
> >
> >> cat f3.pl
> > use Data::Dumper;
> > use POSIX;
> > print "hello world\n";
> >
> >> /usr/local/bin/perl -d:DProf f3.pl
> > hello world
> >
> >> /usr/local/bin/perl f2.pl
> > hello world
> >
> > This is perl, v5.6.1 built for aix-64all
> >
> > So...
> >  DProf alone works.
> >  DProf + 'use' works.
> >  bioperl alone works.
> > But...
> >  DProf + bioperl doesn't work
> >
> > The error may be with DProf. But I don't think
> there
> > is much of a DProf community to speak of.
> >
> > Can anyone else replicate, this?
> > Or better yet shed light on a solution?
> >
> >
> >
> >
> >
> >
> > =====
> > Mike Cariaso
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> >
>
http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >
> >
> --
> Aaron J. Mackey, Ph.D.
> Dept. of Biology, Goddard 212
> University of Pennsylvania       email: 
> amackey at pcbi.upenn.edu
> 415 S. University Avenue         office:
> 215-898-1205
> Philadelphia, PA  19104-6017     fax:   
> 215-746-6697
> 
> 


=====
Mike Cariaso