[Bioperl-l] bioperl is not playing nice with DProf on aix

[Aaron J. Mackey]

If you fire up gdb like so:

% gdb /usr/local/bin/perl core
% bt

What do you get?

-Aaron

On Aug 3, 2004, at 5:24 PM, Mike Cariaso wrote:

> Don't you hate it when someone asks a question and
> then includes pages of code? What you really need is a
> small, tight example which can easily reproduce the
> problem. Ok, I've trimmed this down as much as I
> could.
>
> Here is the problem:
>
>> cat f2.pl
> use Bio::SeqIO;
> print "hello world\n";
>
>> /usr/local/bin/perl -d:DProf f2.pl
> Illegal instruction (core dumped)
>
>
>
> To put that in some context...
>
>
>> cat f1.pl
> print "hello world\n";
>
>> /usr/local/bin/perl -d:DProf f1.pl
> hello world
>
>> cat f2.pl
> use Bio::SeqIO;
> print "hello world\n";
>
>> /usr/local/bin/perl -d:DProf f2.pl
> Illegal instruction (core dumped)
>
>> cat f3.pl
> use Data::Dumper;
> use POSIX;
> print "hello world\n";
>
>> /usr/local/bin/perl -d:DProf f3.pl
> hello world
>
>> /usr/local/bin/perl f2.pl
> hello world
>
> This is perl, v5.6.1 built for aix-64all
>
> So...
>  DProf alone works.
>  DProf + 'use' works.
>  bioperl alone works.
> But...
>  DProf + bioperl doesn't work
>
> The error may be with DProf. But I don't think there
> is much of a DProf community to speak of.
>
> Can anyone else replicate, this?
> Or better yet shed light on a solution?
>
>
>
>
>
>
> =====
> Mike Cariaso
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>
>
--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697