[Bioperl-l] Bio::Tools::Run::WrapperBase ? 

Peter Schattner schattner at alum.mit.edu
Tue Jan 28 08:14:16 EST 2003

thierlan at freesurf.fr wrote:

> I've installed the new release bioperl-1.2.
> I use the package Bio::Tools::Run::StandAloneBlast. This one needs
> the package Bio::Toold::Run::WrapperBase but I don't find it !
> Is it normal ?

I submitted a bug report about this recently and received the following

>Bug report:
StandAloneBlast.pm is now part of the "core".  However it inherits from
Bio::Tools::Run::WrapperBase.pm which is in bioperl-run.  This leads to
problems fo those who do not have bioperl-run installed.  For example
perl bptutorial.pl 100 Bio::Tools::Run::StandAloneBlast
one gets the error message:
Can't locate Bio/Tools/Run/WrapperBase.pm in @INC (@INC contains ...)
I'm not sure how this should be fixed, but it seems like something
should be done
to protect the unwary...

This is already fixed on branch and main trunk.  It was a pkging problem
Ewan moved StandAloneBlast back to the core.  bioperl-1.2.1 bugfix
release will
reflect this change.
Bio::Tools::Run::WraperBase was part of bioperl-run it is now moved to




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