[Bioperl-l] getting alignments out of blast reports

[James Wasmuth]

Yep.  Have a look in the HOWTOs section

http://www.bioperl.org/HOWTOs/html/SearchIO.html

it should be in there, tho I've just looked and been refused permission!?!
can't remember exact code as its nearly midnight here in Edinburgh...

James




----- Original Message -----
From: "Nandita Mullapudi" <nandita at arches.uga.edu>
To: <bioperl-l at bioperl.org>
Sent: Friday, January 24, 2003 10:05 PM
Subject: [Bioperl-l] getting alignments out of blast reports


> can i use Search::IO to get alignments (i.e amino acid seqs of
> query and hit)  out of blast reports for those that fulfill given criteria
> (given e- value..etc.)? i dont see a parameter name for it in the
> documentation..
> or, i'm missing it- on a cold friday evening in georgia!
> tia,
> -nandita
>
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