Fwd: [Bioperl-l] error parsing new ace files with Bio::Assembly

[Andy Nunberg]

Should I just e-mail the author of Bio::Assembly instead of posting to the
list?
Andy
> Wed, 22 Jan 2003 11:33:26 -0600
>
>Hi,
>When trying to load ace files using Bio::Assembly i get a number of errors
>when calling the next assembly
>ie 
>$in=Bio::Assembly::IO->new(-file=>$file, -format=>'ace');
>$assembly=$in->next_assembly; 
>I get several of the following errors
>
>Argument "" isn't numeric in numeric comparison (<=>) at
>/loginhome/anunberg/bioperl-1.2/Bio/SeqFeature/Collection.pm line 436,
><GEN0> line 69.
>At line 69 of my ace file is the quality clipping info eg (QA 81 705 177
>842) which is in the new ace format and not present in the old ace file
>format. 
>
>The new ace format is now considered to be the default format for phrap.
>
>I am using phrap version  0.990319
>
>Thanks
>Andy

*******************************************************************
Andy Nunberg, Ph.D
Computational Biologist
Orion Genomics, LLC 
(314) 615-6989
http://www.oriongenomics.com