[Bioperl-l] Clustalw && large sequence number

[Sally Li]

Yes, I do have the source codes. I have not tried to
the "grep" command. I will try it soon.

Thanks

Sally

--- Brian Osborne <brian_osborne@cognia.com> wrote:
> Sally,
> 
> Do you have the source code? Did you try the grep
> command?
> 
> Brian O.
> 
> -----Original Message-----
> From: Sally Li [mailto:sallyli97@yahoo.com]
> Sent: Thursday, January 16, 2003 4:22 PM
> To: Brian Osborne
> Subject: RE: [Bioperl-l] Clustalw && large sequence
> number
> 
> Hi, Brian,
> Thank you for your reply. I use 1.82. The input is
> fine. After a long run, it hang there for ever.
> There
> is no error message.
> 
> Any ideas?
> 
> Thanks.
> 
> Sally
> 
> --- Brian Osborne <brian_osborne@cognia.com> wrote:
> > Sally,
> >
> > Which version? I seem to remember that in some
> > earlier versions there was a
> > limit on maximum number of input sequences set in
> a
> > header file. If you have
> > the source then do this in your clustalw
> directory:
> >
> > grep define *.h
> >
> > And see if anything like "MAX <something>" or
> "LIMIT
> > <something>" shows up.
> > If you see the sequence number limit then change
> the
> > limit and recompile,
> > i.e. "make".
> >
> > Brian O.
> >
> >
> >
> >
> >
> > -----Original Message-----
> > From: bioperl-l-admin@bioperl.org
> > [mailto:bioperl-l-admin@bioperl.org]On
> > Behalf Of Sally Li
> > Sent: Thursday, January 16, 2003 3:54 PM
> > To: bioperl-l@bioperl.org
> > Subject: [Bioperl-l] Clustalw && large sequence
> > number
> >
> > Hi,
> >
> >  I have clustalw run in my Red Hat 8.0 of IBM
> > eServer
> >  which has 6 G memory. But I failed to get the
> > aligment
> > done if sequence number is big, like, 4000
> > sequences.
> >  Any  idea?
> >
> >  Thank you very much.
> >
> >  Sally
> >
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> >
> 
> 
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