[Bioperl-l] Bio::Graphics Question

Leonardo Marino-Ramirez marino@oligomers.tamu.edu
Tue, 7 Jan 2003 15:30:16 -0500


Jun,

Yes, bioperl 1.2 is a stable release get it with wget at:
http://bioperl.org/DIST/bioperl-1.2.tar.gz

This release is also available at cpan:

http://search.cpan.org/CPAN/authors/id/B/BI/BIRNEY/bioperl-1.2.tar.gz

Leonardo

> -----Original Message-----
> From: bioperl-l-admin@bioperl.org 
> [mailto:bioperl-l-admin@bioperl.org] On Behalf Of Jun Wan
> Sent: Tuesday, January 07, 2003 3:02 PM
> To: Heikki Lehvaslaiho
> Cc: Bioperl
> Subject: Re: [Bioperl-l] Bio::Graphics Question
> 
> 
> Where is the bioperl 1.2? I can't find it on the bioperl.org!
> 
> Is it a stable release?
> 
> Jun
> 
> On 7 Jan 2003, Heikki Lehvaslaiho wrote:
> 
> > Jun,
> > 
> > Lincoln should be able to give a list of bugs that have been fixed, 
> > but what you really need to do is to upgrade to newly 
> released bioperl 
> > 1.2
> > 
> > 
> > 
> > BTW, The current CVS and supposedly the distribution contains two 
> > copies of the script:
> >  
> > scripts/biographics/render_sequence.pl
> > scripts/graphics/render_sequence.pl
> > 
> > The one in biographics directory is the one you want. The other one 
> > and possibly the whole directory need to be removed. Lincoln?
> > 
> > 
> > 	-Heikki
> > 
> > On Tue, 2003-01-07 at 14:30, Jun Wan wrote:
> > > Hi,
> > > 
> > > I am using Redhat 8.0 and have Bio-perl 1.02 installed. I 
> installed 
> > > GD-1.40 resently and want try some scripts using Bio::Graphics. I 
> > > try to run the "render_sequence.pl" came with the 
> Bio-perl 1.02. It 
> > > runs without error. But the output can't read by gqview 
> or Mozilla.
> > > 
> > > Any ideal?
> > > 
> > > Thank you!
> > > 
> > > Jun
> > > 
> > > _______________________________________________
> > > Bioperl-l mailing list
> > > Bioperl-l@bioperl.org 
> http://bioperl.org/mailman/listinfo/bioperl-l
> > -- 
> > ______ 
> _/      _/_____________________________________________________
> >       _/      _/                      
> http://www.ebi.ac.uk/mutations/
> >      _/  _/  _/  Heikki 
> Lehvaslaiho          heikki@ebi.ac.uk
> >     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
> >    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
> >   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
> >      _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
> > ___ 
> _/_/_/_/_/________________________________________________________
> > 
> 
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