[Bioperl-l] gapped translate

[Ewan Birney]

On Sat, 27 Dec 2003, Jason Stajich wrote:

> Does anyone object to adding some code to CodonTable->translate
> so that
>  atg---aar---aay
> becomes
>  M-K--N
>
> Currently it will be translated as
>  MXKXXN

surely it should be

atg---aar------aay

to get M-K--N?


...if so, fine by me, but I'd wait for some other views as well.


I'd also map \.\.\. to \.




>
>
> -jason
>
>
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
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