[Bioperl-l] Really Minor (but annoying) things

[Jason Stajich]

Wish you could have sent this pre-1.4 release Rob and would have gotten
fixed...


On Mon, 22 Dec 2003, Rob Edwards wrote:

> Here are a couple of really minor things that I picked up recently (and
> if I don't send them now, I am bound to forget). I can go ahead and
> submit these changes unless there are objections:
>
> Bio::Tools::RemoteBlast
>
> The line
> open(SAVEOUT, ">$filename") or $self->throw("cannot open $filename");
> should probably be
> open(SAVEOUT, ">>$filename") or $self->throw("cannot open $filename");
> so that you can put all the BLAST results into one file.
>
> Bio::Matrix::PhylipDist->new
>
> the docs are completely wrong for this because the module was updated
> to use the new Matrix::IO system, and if it is called as described in
> the docs it should either silently pass this information onto the
> correct module (Bio::Matrix::IO) or throw a warning.
>

I'm the culprit here - I'll look into what can be done - we really needed
to centralize this code since we had 2 different places doing this sort of
parsing.

> Rob
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu