[Bioperl-l] Bundle::Bioperl updated for bioperl-1.4 release

[Heikki Lehvaslaiho]

Todd,

I do not think we should add the dependency before it can be installed.  I'd 
hate to add it and then get users complaining and not being able to suggest a 
fix. Looks like we'll have to leave its addition after the initial 1.4.

I just tried installing it again with cpan:
-----------------------------------------------------------------------
Running install for module SVG::Graph

  The module SVG::Graph isn't available on CPAN.

  Either the module has not yet been uploaded to CPAN, or it is
  temporary unavailable. Please contact the author to find out
  more about the status. Try 'i SVG::Graph'.
-----------------------------------------------------------------------

Have you had any luck in starting to sort this out?

	-Heikki

On Monday 22 Dec 2003 12:22 am, you wrote:
> so are we okay on adding the SVG::Graph dependency?
>
> -Allen
>
> On Thu, 18 Dec 2003, Heikki Lehvaslaiho wrote:
> > Allen,
> >
> > There is a problem. I can find SVG::Graph in search.cpan.org, but I could
> > not install it.  I found out that is an other, conflicting, SVG::Graph
> > module by Mike Miller: http://search.cpan.org/~mrmike/ .
> >
> > 	-Heikki
> >
> > On Thursday 18 Dec 2003 5:08 pm, Allen Day wrote:
> > > there is a dependency on SVG::Graph 0.01 by module
> > > Bio::TreeIO::svggraph.
> > >
> > > -allen
> > >
> > > > This is the old bundle info:
> > > > > Bundle id = Bundle::BioPerl
> > > > >      CPAN_USERID  CRAFFI (Chris Dagdigian <dag at sonsorol.org>)
> > > > >      CPAN_VERSION 2.05
> > > > >      CPAN_FILE    C/CR/CRAFFI/Bundle-BioPerl-2.05.tar.gz
> > > > >      MANPAGE      Bundle::BioPerl - A bundle to install external
> > > > > CPAN modules used by BioPerl
> > > > >      CONTAINS     Bundle::LWP File::Temp File::Spec IO::Scalar
> > > > > IO::String HTTP::Request::Common HTTP::Status LWP::UserAgent
> > > > > URI::Escape XML::Parser XML::Parser::PerlSAX XML::Writer XML::Node
> > > > > XML::Twig Text::Iconv Scalar::Util XML::DOM SOAP::Lite GD Storable
> > > > > Text::Shellwords Data::Stag Graph::Directed
> > > > >      INST_FILE    /root/.cpan/Bundle/BioPerl.pm
> > > > >      INST_VERSION 2.05
> > > >
> > > > This is the new bundle:
> > > > > cpan> i Bundle::BioPerl
> > > > > Strange distribution name [Bundle::BioPerl]
> > > > > Bundle id = Bundle::BioPerl
> > > > >      CPAN_USERID  CRAFFI (Chris Dagdigian <dag at sonsorol.org>)
> > > > >      CPAN_VERSION 2.05
> > > > >      CPAN_FILE    C/CR/CRAFFI/Bundle-BioPerl-2.05.tar.gz
> > > > >      MANPAGE      Bundle::BioPerl - A bundle to install external
> > > > > CPAN modules used by BioPerl
> > > > >      CONTAINS     Bundle::LWP File::Temp File::Spec IO::Scalar
> > > > > IO::String HTML::Entities HTML::Parser HTTP::Request::Common
> > > > > HTTP::Status LWP::UserAgent URI::Escape XML::Parser
> > > > > XML::Parser::PerlSAX XML::Writer XML::Node XML::Twig Text::Iconv
> > > > > Scalar::Util XML::DOM SOAP::Lite GD GD::SVG SVG Storable
> > > > > Text::Shellwords Data::Stag Graph::Directed
> > > > >      INST_FILE    /usr/lib/perl5/site_perl/5.8.0/Bundle/BioPerl.pm
> > > > >      INST_VERSION 2.1.0
> > > >
> > > > -Chris
> > > >
> > > >
> > > > _______________________________________________
> > > > Bioperl-l mailing list
> > > > Bioperl-l at portal.open-bio.org
> > > > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> > >
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
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