[Bioperl-l] Disabling web tests [some tests fail on Mac OS X]

[Koen van der Drift]

Hi,

Thanks for fixing all those tests which fail when offline. I want to 
include the tests in the fink-package for the upcoming, which is why I 
am so picky ;-)

I found one more oddity, though. When an older bioperl is present, the 
Search.t test passes, however, if no bioperl is installed, it fails as 
follows:

...
...
ok 930
Bio::SearchIO: psiblast cannot be found
Exception
------------- EXCEPTION  -------------
MSG: Failed to load module Bio::SearchIO::psiblast. Can't locate 
Bio/Search/Result/PsiBlastResult.pm in @INC (@INC contains: t . 
/sw/lib/perl5/5.8.1/darwin-thread-multi-2level /sw/lib/perl5/5.8.1 
/sw/lib/perl5/darwin-thread-multi-2level /sw/lib/perl5 
/sw/lib/perl5/darwin /sw/lib/perl5//5.8.1/darwin-thread-multi-2level 
/sw/lib/perl5//5.8.1 /sw/lib/perl5//darwin-thread-multi-2level 
/sw/lib/perl5/ /System/Library/Perl/5.8.1/darwin-thread-multi-2level 
/System/Library/Perl/5.8.1 
/Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1 
/Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level 
/Network/Library/Perl/5.8.1 /Network/Library/Perl) at 
Bio/SearchIO/psiblast.pm line 152, <GEN55> line 245.
BEGIN failed--compilation aborted at Bio/SearchIO/psiblast.pm line 152, 
<GEN55> line 245.
Compilation failed in require at Bio/Root/Root.pm line 394, <GEN55> 
line 245.

STACK Bio::Root::Root::_load_module Bio/Root/Root.pm:396
STACK (eval) Bio/SearchIO.pm:387
STACK Bio::SearchIO::_load_format_module Bio/SearchIO.pm:386
STACK Bio::SearchIO::new Bio/SearchIO.pm:166
STACK toplevel t/SearchIO.t:1303

--------------------------------------

For more information about the SearchIO system please see the SearchIO 
docs.
This includes ways of checking for formats at compile time, not run time
Can't call method "next_result" on an undefined value at t/SearchIO.t 
line 1307.
[ModusOperandi:~/Desktop/bioperl-live] koen%



- Koen.