[Bioperl-l] Blast return codes

[Matthew Laird]

On 14 Dec 2003, Keith James wrote:

>     Matthew> So this certainly seems like some deep down perl/OS
>     Matthew> voodoo.
> 
> Unfortunately, yes :( Especially as building Perl from source rather
> than using RPMs seems to fix it.

Unfortunately it doesn't seem to always fix it... I'm not sure what to do 
that this point.

>     Matthew> I'd still be interested in hearing what envirnoment
>     Matthew> variables to set to run t/StandAloneBlast.t.
> 
> I think it should pick up the standard blast environment variables
> BLASTDIR and BLASTDATADIR via %ENV.

Those are set, the two variables it's looking for are:
nt_database and amino_database_file
For the StandAloneBlast.t, what should those be set to?  Then I can run 
the test script and see what happens...  Thanks.

-- 
Matthew Laird
SysAdmin/Web Developer, Brinkman Laboratory, MBB Dept.
Simon Fraser University