[Bioperl-l] Bio::DB::GenBank (fwd)

[Heikki Lehvaslaiho]

Dear Shuai Weng,

You are right. Enrez URL changed. You must be using bioperl < 1.2.3. Upgrade 
and the script will work again.

Yours,

	-Heikki

On Thursday 11 Dec 2003 2:43 pm, Jason Stajich wrote:
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
>
> ---------- Forwarded message ----------
> Date: Wed, 10 Dec 2003 16:45:58 -0800 (PST)
> From: Shuai Weng <shuai at genome.stanford.edu>
> To: amackey at virginia.edu
> Cc: jason at bioperl.org
> Subject: Bio::DB::GenBank
>
>
> Hi,
>
> 	The Bio::DB::GenBank doesn't work for me now.
>
> The example code I used is below.
>
> ======================
> use strict;
> use Bio::DB::GenBank;
>
> my $gb  = new Bio::DB::GenBank;
>
> my $seqId = 'L00683';
>
> my $seqObj = $gb->get_Stream_by_id($seqId);
>
> while ( my $seq = $seqObj->next_seq() ) {
>
> 	### do something here
>
> }
> ======================
>
> 	This module worked great before. I was wondering
> if the problem is due to the NCBI entrez url change...
>
> Cheers,
>
> Shuai
>
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________