[Bioperl-l] RNA fold

[Morten Lindow]

On Fri, Dec 05, 2003 at 10:22:53PM +0200, Vesko Baev wrote:
> Hi to all,
> if anyone knows a module or external program (which can be linked to
>bioperl) for folding a RNA predicting hairpins and calculating a free
>energy?

Yes the Vienna RNA package has a perl wrapping, which among other things
allows you to code like this

use RNA;

my ($structure, $minimum_free_energy) = RNA::fold('auccuaacuggucuuagg');


--
Morten Lindow