[Bioperl-l] RNA fold

[Jason Stajich]

RNAFold is a nice freely available library for this (ViennaRNA fold) and
there is a perl interface to it as well so you don't have to write any
parsers you can get the data out from the structures.  I found it very
easy to use and you can link c or perl code against the libraries it
provides.

There is no specific integration with Bioperl however.

-jason
On Fri, 5 Dec 2003, Vesko Baev wrote:

> Hi to all,
> if anyone knows a module or external program (which can be linked to bioperl) for folding a RNA predicting hairpins and calculating a free energy?
>
> Thanks to ALL!
>
> Vesselin Baev
> Bulgaria
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu