[Bioperl-l] Re: [Bioperl-guts-l] bioperl commit

Aaron J. Mackey amackey at pcbi.upenn.edu
Tue Dec 2 17:52:12 EST 2003


Wow.  I don't know how that can possibly work.  It seems to be breaking 
the laws of UNIX pipes (which shouldn't be seekable).  What am I 
missing here?

-Aaron

On Dec 2, 2003, at 5:28 PM, Heikki Lehvaslaiho wrote:

> Works for me:
>
> bala ~/src/bioperl/core> perl -MBio::SeqIO -le 'print
> Bio::SeqIO->new(-fh=>\*STDIN)->next_seq->id' < t/data/test.genbank
> DDU63596
> bala ~/src/bioperl/core>
>
> 	-Heikki
>
> On Tuesday 02 Dec 2003 10:00 pm, Aaron J. Mackey wrote:
>> Bio::SeqIO->new(-fh=>\*STDIN)->next_seq->id' < test.gbk
>
> -Aaron
>
>
> -- 
> ______ _/      _/_____________________________________________________
>       _/      _/                      http://www.ebi.ac.uk/mutations/
>      _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
>     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
>    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
>   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
>      _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
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