[Bioperl-l] megablast parsing broken?

[Neil Saunders]

> Do the test files t/data/503384.MEGABLAST.2 & t/data/503384.MEGABLAST.0
> parse for you okay if you run them through your script?
> This is what is tested and they seem to work fine with both D=0 and D=2
> reports.

Thanks for the tip.

I don't have the .0 file in my distribution (I have 1.2.1), but my 
script worked fine on the D=2 file.

The only difference I can see is that the t/data output file is from 
MEGABLAST 2.2.4 and I am using 2.2.5.  Could this be the problem?

Neil
-- 
 School of Biotechnology and Biomolecular Sciences,
 The University of New South Wales,
 Sydney 2052,
 Australia

http://psychro.bioinformatics.unsw.edu.au/neil/index.php