[Bioperl-l]
Re: [BioSQL-l] Bug in loading duplicate but non-identical
swissprot references
Elia Stupka
elia at tll.org.sg
Mon Apr 21 15:41:48 EDT 2003
> All tests pass, but that doesn't mean that the case that triggered the
> problem is proven to be solved, as it is not yet included in any of
> the tests. I'll do that later, or Elia you're welcome to add that to a
> test too.
Unfortunately it doesn't. The changes behave the same way my dirty
testing hack from Friday did, i.e. the medline id gets picked up the
second time and gets stored in the dbxref table, but it doesn't trigger
an update of the dbxref_id column in the reference table for that
reference.
Attached super-simple test script and debug output for reference...
Elia
---
Bioinformatics Program Manager
Temasek Life Sciences Laboratory
1, Research Link
Singapore 117604
Tel. +65 6874 4945
Fax. +65 6872 7007
-------------- next part --------------
A non-text attachment was scrubbed...
Name: test_biosqlref.log
Type: application/octet-stream
Size: 2925 bytes
Desc: not available
Url : http://open-bio.org/pipermail/bioperl-l/attachments/20030421/f2d0d234/test_biosqlref.obj
-------------- next part --------------
A non-text attachment was scrubbed...
Name: test_biosqlref.pl
Type: application/octet-stream
Size: 1045 bytes
Desc: not available
Url : http://open-bio.org/pipermail/bioperl-l/attachments/20030421/f2d0d234/test_biosqlref.lha
More information about the Bioperl-l
mailing list