[Bioperl-l] Loading SwissProt Data into Oracle

[Jason Stajich]

In the biosql CVS repository you want the script
bioperl-db/scripts/biosql/load_seqdatabase.pl

see http://cvs.open-bio.org/ for more info on our repository.

In the nearish future I expect Hilmar/Aaron/Chris will make a bioperl-db
release of using the current biosql schema.

-jason

On Fri, 18 Apr 2003, Neil Evans wrote:

> Hello,
>
> I'm interested in loading the raw swissprot data into an Oracle database.  This, of course, involves:
> 1. The parsing of the data to produce some DB-friendly format (possibly SQL)
> 2. The design/loading of DB schema to contain the data
> 3. The actual loading of the data
>
> I've done some reading on BioSQL and I think that may be the way to go.  I figure there must be some PERL script out there which can parse swissprot, and possibly even perform the SQL generation.
>
> Any pointers?
>
> thanks!
> -Neil.
>
> --
> ===============================================
> Neil.Evans at oracle.com
> Senior Software Developer
> Oracle Web Services UDDI Registry
> Oracle Corporation
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu