[Bioperl-l] blat format parser for Bio::SearchIO?

[Jason Stajich]

Okay, I wrote a quick axt parser, it is in CVS now.
Bio::SearchIO::axt

Still would like a PSL and PSLX parser I think but the AXT should be a
good example of how to go about writing a simple parser. (bear in
mind we'll need to add PSL into the GenericHSP check when determining
strand).

-jason
On Fri, 18 Apr 2003, Matthew Betts wrote:

> Hi,
>
> Is anyone working on a parser of blat's output format for Bio::SearchIO?
> I'm wondering whether to try writing my own...
>
> Thanks,
>
> Matthew
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu