[Bioperl-l] Bio::Ontology::simpleGOparser

Hilmar Lapp hlapp at gnf.org
Mon Apr 14 16:15:15 EDT 2003


Off hand, make sure you are using bioperl 1.2.1. Your code indicates 
you're not (as the documentation would have told you not to do this). 
Your code should then look like:

	use Bio::OntologyIO;
	my $ontio = Bio::OntologyIO->new(-format => 'goflat',
	                                 -defs_file => 'go.defs',
	                                 -files => ['file1','file2']);
	my $go = $ontio->next_ontology();

file1, file2 etc would be the different rel.ships files that come with 
GO.

	-hilmar

On Monday, April 14, 2003, at 09:07  AM, Christian Greggio wrote:

> Hi,
>
> I'm trying to use "Bio::Ontology::simpleGOparser". But, I got the
> following error message:
> Can't locate object method "new" via package
> "Bio::Ontology::simpleGOparser" (perhaps you forgot to load
> "Bio::Ontology::simpleGOparser"?) at simpleGOparser_example.pm line 7.
>
> My paths are ok. Could you help me?
>
> Thanks,
> Christian.
>
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> Bioperl-l at bioperl.org
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>
-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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