[Bioperl-l] data class for swissprot

[Hilmar Lapp]

On Friday, April 11, 2003, at 02:17  AM, Elia Stupka wrote:

> Hello folks,
>
> in the never-ending quest of parsing every bit and byte of flat-files 
> a user has complained that we don't parse the DATA CLASS of Swissprot 
> (the thing that comes after the id in swissprot and defines if it is 
> STANDARD or preliminary). I am happy to add it in, just wanted to 
> check is there something smarter people advise besides just adding a 
> get/set? And if it's ok, considering it is only for swissprot 
> sequences, should I add it just to Bio::Seq::RichSeq?

Yes.

It'd helpful if you document what the exact meaning is of this piece of 
annotation. I'm not sure what kind of business logic you'd base on it, 
but it'd be probably nice to spit it back out if we read it in in the 
first place.

	-hilmar

>
> Elia
>
> ---
> Bioinformatics Program Manager
> Temasek Life Sciences Laboratory
> 1, Research Link
> Singapore 117604
> Tel. +65 6874 4945
> Fax. +65 6872 7007
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>
-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------