[Bioperl-l] Extracting gi no from refseq record

[Jason Stajich]

something else you might think about - using Bio::DB::Flat instead - it is
more modern than the Bio::Index modules and might be a little more
flexible in the end.

-jason

On Fri, 4 Apr 2003, Siddhartha Basu wrote:

> I am using the whole human proteome file release from ebi.
> It's available from http://www.ebi.ac.uk/proteome/index.html
>
> It's in swissprot format.
> So it's not maintaing the standard format it seems.
>
> siddhartha
>
> Hilmar Lapp wrote:
> >
> > On Friday, April 4, 2003, at 02:36  PM, Siddhartha Basu wrote:
> >
> >> ID   RHOB_HUMAN     STANDARD;      PRT;   196 AA.
> >> ID   RHOB_MOUSE
> >> ID   RHOB_RAT
> >> AC   P01121; Q9CUV7;
> >>
> >
> > In which file did you find this? In sprot41.dat.gz I only find the first
> > ID line.
> >
> >     -hilmar
> >
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu