[Bioperl-l] get sequences from HMMER::Results ?

[Brian Osborne]

Steve,

It looks like the Bio::SearchIO::hmmer module can do this...

Brian O.

-----Original Message-----
From: bioperl-l-admin@bioperl.org [mailto:bioperl-l-admin@bioperl.org]On
Behalf Of Steven Cannon
Sent: Tuesday, July 30, 2002 11:23 AM
To: bioperl-l@bioperl.org
Subject: [Bioperl-l] get sequences from HMMER::Results ?

Is there a way to use Bio::Tools::HMMER::Results (or another module) to
return the sequences (not just the bit score or domain start and end
etc.) from the alignments in a hmmsearch output file?

- Steve Cannon

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