[Bioperl-l] Returned mail: see transcript for details
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Elia Stupka <elia@fugu-sg.org>
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----- Transcript of session follows -----
... while talking to mail.fugu-sg.org.:
>>> HELO pesto.lsjs.org
<<< 500 Please login at http://208.54.76.1/login_user.html
554 5.0.0 Elia Stupka <elia@fugu-sg.org>,shawn hoon <shawnh@fugu-sg.org>... Service unavailable
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... while talking to externalmx.valinux.com.:
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554 5.0.0 "GMOD Devel (E-mail)" <gmod-devel@lists.sourceforge.net>... Service unavailable
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... while talking to bio.perl.org.:
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554 5.0.0 Lincoln Stein <lstein@cshl.org>... Service unavailable
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Mon, 29 Jul 2002 22:58:00 -0700
From: Lincoln Stein <lstein@cshl.org>
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Date: Mon, 29 Jul 2002 22:57:59 -0700
To: Elia Stupka <elia@fugu-sg.org>
Cc: Lincoln Stein <lstein@cshl.org>, Bioperl <bioperl-l@bioperl.org>,
"GMOD Devel (E-mail)" <gmod-devel@lists.sourceforge.net>,
shawn hoon <shawnh@fugu-sg.org>
Subject: Re: [Bioperl-l] biosql,das,gmod,gfd integration
In-Reply-To: <Pine.LNX.4.21.0207241626200.11747-100000@worf.fugu-sg.org>
References: <200207231129.38055.lstein@cshl.org>
<Pine.LNX.4.21.0207241626200.11747-100000@worf.fugu-sg.org>
X-Mailer: VM 6.96 under 21.1 (patch 12) "Channel Islands" XEmacs Lucid
Reply-To: lstein@cshl.org
Hi,
Chris, Xu, Suzi and I worked through the architecture of the adapter
and decided it wasn't so hard to get it working in the general case
(currently we have a very specific case working under gbrowse, but it
will be hard to extend as the gadfly schema evolves). The adapter
won't be done by BOSC, but there should be something by the end of
summer. Currently our placeholder classes are in the
Generic-Genome-Browser CVS main branch, should you want to take a
look. They are:
Bio::DB::Gadfly::Adaptor
Bio::DB::Gadfly::Segment
Lincoln
Elia Stupka writes:
> > If you've got any progress to report by this coming weekend, let me know. I'm
> > going to be working with Suzi and Chris on Monday to get gadfly working
> > seamlessly under gbrowse.
>
> Realistically it is not going to happen this week, so go ahead with Suzi
> and Chris and let us know what happened on that side :)
>
> Elia
>
> ********************************
> * http://www.fugu-sg.org/~elia *
> * tel: +65 6874 1467 *
> * mobile: +65 9030 7613 *
> * fax: +65 6777 0402 *
> ********************************
>
>
>
--
========================================================================
Lincoln D. Stein Cold Spring Harbor Laboratory
lstein@cshl.org Cold Spring Harbor, NY
Positions available at my lab: see http://stein.cshl.org/#hire
========================================================================
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