[Bioperl-l] phrap ace format parser?

[Brian Desany]

>Does any know whether there is bioperl module to parse from or
>to  phrap
>ace output file? BTW, does anyone know the documentation of
>this ace format?

Documentation can be found at http://www.phrap.org, it's part of the consed
documentation.

I have cobbled together a module that parses Ace files, but it's not
"bioperl-compliant" yet, in that coding style isn't up to snuff and there's
site-specific code in it.

I can send it to you off-list if you like, or you can wait until I get
around to bioperl-ifying it (I don't have a timeframe for that).

-Brian.
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Brian A. Desany, Ph.D.
Dictyostelium Genome Sequencing Project
Baylor College of Medicine
bdesany@bcm.tmc.edu
(713)798-5639
http://www.dictygenome.org
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