[Bioperl-l] indexing and accessing local database
Qunfeng Dong
qfdong@iastate.edu
Tue, 9 Jul 2002 11:26:47 -0500 (CDT)
Hi,
I am trying to follow the sample code from
http://bioperl.org/Core/POD/bptutorial.html#III_1_1_Accessing_remote_databas
to build a local fasta sequence database
#!/usr/bin/perl -w
#scriptName - BuildIndex.pl
use Bio::Index::Fasta; # using fasta file format
$Index_File_Name = shift;
$inx = Bio::Index::Fasta->new(
-filename => $Index_File_Name,
-write_flag => 1);
$inx->make_index(@ARGV);
then I ran the script BuildIndex.pl as
% BuildIndex.pl indexName FastaSeqName
and I got Segmentation fault. Any idea why?
Qunfeng Dong