[Bioperl-l] problems with 0.71 Bio::Tools::Blast

David Martin dmartin@bioinformatics.msiwtb.dundee.ac.uk
Fri, 7 Sep 2001 17:15:04 +0100 (BST)


I have been using the Blast parser with a degree of success. Thanks guys.

One problem is that the documented methods in SeqAnal for database_letters
and database_seqs do not appear to be working.

Also Bio::Tools::Blast::Sbjct doesn't ahve an accessor method to the
Subject name, I am forced to access the data member directly (as
${$hit}{'_name'}).

Otherwise things are fine..

..d


----------------------------------
David Martin PhD
Bioinformatics Scientific Officer
Wellcome Trust Biocentre, Dundee
----------------------------------