[Bioperl-l] Blast parsing.

[Marc Logghe]

Hi David, 
Maybe it is not exactly what you need, but have you tried
$BlastObj->display ?
Marc


> -----Original Message-----
> From: David Martin [mailto:dmartin@bioinformatics.msiwtb.dundee.ac.uk]
> Sent: Monday, September 03, 2001 5:54 PM
> To: bioperl-l@bioperl.org
> Subject: [Bioperl-l] Blast parsing.
> 
> 
> 
> I am in need of a Blast parser so have turned to Bioperl.
> 
> Having worked out what I think it is doing there seem to be 
> some gaps int
> he details it can report.
> 
> The Bio::Tools::Blast object doesn't have any methods for 
> returning the
> name of the databases, the database statistics (number of 
> seqs/bases), or
> the query sequence details (name, length, type etc.)
> 
> Are there any plans for these to be included or should I be 
> looking at a
> different module that may be able to help?
> 
> ..d
> 
> ----------------------------------
> David Martin PhD
> Bioinformatics Scientific Officer
> Wellcome Trust Biocentre, Dundee
> ----------------------------------
> 
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