[Bioperl-l] BPslite and iterations

[Jason Stajich]

To make this work a blast object will have to be part of the CORBA
spec, or some work will have to be done on the java server end to turn
the blast results into appropriately generic objects
(a Similarity SeqFeature).  Some aspects of the LSR BSA proposal may be
appropriate for us to try and pull in to make a biocorba analysis
specification.  This is the "next step" for biocorba once all the core
objects can be mapped by the 3 language projects.

-Jason

On Fri, 30 Mar 2001, Wiepert, Mathieu wrote:

> Biojava has a SAXLike parser for Blast, WU Blast, HUMMER and GCG (not all
> versions ant types of all programs thought).  Insert that driver in to an
> XSLT processor , and any XSL that anyone wants could be generated.  So if
> the BioCorba thing works out, wouldn't that be a good longer term solution?
>
>
>  -----Original Message-----
> From: 	Jason Stajich [mailto:jason@chg.mc.duke.edu]
> Sent:	Friday, March 30, 2001 11:02 AM
> To:	Bioperl; Peter Schattner
> Cc:	a.mueller@icrf.icnet.uk
> Subject:	Re: [Bioperl-l] BPslite and iterations
>
> On Fri, 30 Mar 2001, Peter Schattner wrote:
>
> > Arne Mueller wrote:
> >
> > > Also, are there any future plans to parse xml output from blast/psiblast
> > > ?
> >
> > Not that I am aware of.
> >
> No specific future plans, but it is something we want bioperl to be able
> to do, just haven't had anyone volunteer to do it yet.
>
> >
> > Regards
> >
> > Peter
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
> >
>
> Jason Stajich
> jason@chg.mc.duke.edu
> Center for Human Genetics
> Duke University Medical Center
> http://www.chg.duke.edu/
>
>
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Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center
http://www.chg.duke.edu/