[Bioperl-l] masking sequences

[Jason Stajich]

RepeatMasker is what is typically used for masking repeats.  We don't
attempt to improve upon it, but some work has been done to simplify
dealing with the output.
RepeatMasker:
http://www.genome.washington.edu/UWGC/analysistools/repeatmask.htm
http://ftp.genome.washington.edu/RM/RepeatMasker.html

On Tue, 27 Mar 2001, Jolyon Holdstock wrote:

> does bioperl have any capabilities with respect to masking repeats?
> I've read the documentation but can't find anything.
>
> cheers
>
> jolyon holdstock
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Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center
http://www.chg.duke.edu/