[Bioperl-l] BLASTALL -T
Obionor de Oliveira Nobrega
Fri, 23 Mar 2001 17:08:49 -0300 (EST)
Hi Jason (and all)
I'm using Linux(debian) plataform
And my webbased interface is ncbi blast based on.
I run blastall with no arguments in cmd line and doesn't show the -T
arguments (just others). It's like a invalid argument.
However, i readed README.bls (that came with the program), and exist this
arguments (-T to return html results). So, i used the argument -T to
return my processed results in may web page, and it's ok, it-s really
return html pages.
I don't understanding why this arguments is ok in my webpage, and isn't in
Could you help me?
On Thu, 22 Mar 2001, Jason Stajich wrote:
> so you're probably running different versions/flavors of blast? you
> haven't told us which platform you are running on, is this your webbased
> interface or someone else's, is it wu-blast, ncbi blast. if you run blast with no
> arguments it will give you the valid cmd line args.
> gotta give details if you want help.
> On Thu, 22 Mar 2001, Obionor de Oliveira Nobrega wrote:
> > I'm problem with this command: BLASTALL and -T argument.
> > My homepage has a entry with blastall -T T (to return html page) and
> > it's ok, but when i run the same command in the line command, it's return :
> > ERROR:invalid argument: -T.
> > I don't know why this arguments is ok in web and doesn't ok in the
> > line command.
> > Would you know where is problem?
> > thank's
> > obionor
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> Jason Stajich
> Center for Human Genetics
> Duke University Medical Center