[Bioperl-l] Re: sub-locations vs sub-features
Simon Cawley
scawley@neomorphic.com
Thu, 22 Mar 2001 10:54:36 -0800 (PST)
On Thu, 22 Mar 2001, Hilmar Lapp wrote:
> A CDS as any other feature with a compound location is supposed to
> end up as a single feature with a location that has sublocations
> (Simon, you might want to check the POD of Bio::Location::Split).
> That's what the entity relationships really are.
>
> This behaviour may be insufficiently documented. A point to be
> added to bptutorial I guess.
>
> Hilmar
Thanks for the explanation Hilmar. This approach makes good sense, but
isn't backwards compatible. I had scripts that ran fine under the last
release of bioperl but which now break when I try to access subfeatures
of CDS features. It was simple to change with the info you and Jason provided,
but you might get a lot of questions on this issue.
All the best,
Simon