[Bioperl-l] NT contigs and Bio::DB::GenBank
Hilmar Lapp
hilmarl@yahoo.com
Thu, 22 Mar 2001 09:47:51 -0800
Joel Martin wrote:
>
> NT contigs contain sequence, but entrez doesn't display it in the default
> genbank format. You have to request fasta format, calling
>
> $dbobj->request_format("fasta");
>
> before
>
> my $seq = $dbobj->get_Seq_by_acc($accession);
>
> makes it work for me.
>
We should put this into some docs, e.g. the module POD and
bptutorial. In addition, I am realizing that the GenBank.pm POD
mentions that batch mode might be supported in the future. It has
been supported already for quite a while, right?
Hilmar
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Hilmar Lapp email: hilmarl@yahoo.com
GNF, San Diego, Ca. 92122 phone: +1 858 812 1757
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