[Bioperl-l] Fuzzy matching sequences

[Brad Langhorst]

On Friday 16 March 2001 05:31 am, Kris Boulez wrote:
> Do people know of a way to do this using perl regexes (I couldn't find
> anything in the Friedl book). The only solution I can think of is to
> create a blastable DB from the x-mers and blast all sequences against
> this DB.
I blased the x-mers against the sequence, it worked well
and scaled very nicely on a time-logic blast host.
I'm not sure how it would scale on normal hardware, probably just fine.

brad