FW: [Bioperl-l] learing through teaching

[Sammons, Scott]

 I am also a beginner with bioperl and noticed the lack of 
 parsing multiple 
 queries within the same file.  In fact, if you go to Ian 
 Korf's web page
 (http://sapiens.wustl.edu/~ikorf/BPlite.pm),
 there is a package BPlite::Multi which does just this but it 
 doesn't appear
 to have made it into the bioperl release.
 
 -Scott Sammons
 Centers for Disease Control and Prevention
 1600 Clifton Rd, NE
 MS G36
 Atlanta, GA 30333
 404-639-3560 (Voice)
 404-639-1331 (FAX)
 ssammons@cdc.gov
 
> > -----Original Message-----
> > From: Michael Myers [mailto:myersm@mail.rockefeller.edu]
> > Sent: Tuesday, March 13, 2001 3:44 PM
> > To: bioperl-l@bioperl.org
> > Subject: Re: [Bioperl-l] learing through teaching
> > 
> > 
> > >Secondly, in explaining how to write a blast parser, 
> > shouldn't BPlite be
> > >able to handle multiple queries in the same file.  
> Currently the code
> > >doesn't have the ability to loop through multiple queries, 
> > Ian have you
> > >done any updates, or am I perhaps missing something in the 
> > invokation.
> > 
> > 
> > I agree that the ability to process multiple queries is 
> > important for BPlite.
> > 
> > I have been learning perl by writing my own parser for output 
> > from a program called blastall, which concatenates the output 
> > for each query in multiple runs of blast.
> > 
> > I don't think I phrased that very well ;<
> > 
> > -- mpm
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> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
> > 
>