[Bioperl-l] GCG MSF format alignments

[Hilmar Lapp]

Jason Stajich wrote:
> 
> On Mon, 12 Mar 2001, Ewan Birney wrote:
> 
> > On Mon, 12 Mar 2001, Peter Schattner wrote:
> >
> 
> > I think this is cool for 0.7.1 as well as on the main trunk -
> > Hilmar/Jason? Thoughts?
> >
> 
> I'm cool with putting on both branches and this shouldn't introduce too
> many changes to the structure.
> 

I agree. However, LocatableSeq.pm has to stay on the branch (it
shouldn't even be deprecated). On the main trunk, you can (someone
_should_ sooner or later) migrate from LocatableSeq to
Bio::Seq::AlignedSeq (or Bio::Seq::LocatableSeq if you wish), and then
deprecate Bio::LocatableSeq.

	Hilmar
-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp@gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------