[Bioperl-l] Branch in. (big grin)

[Jason Stajich]

On Fri, 2 Mar 2001, Ewan Birney wrote:

> 
> I have put the branch tag in. It is the excitingly named 
> 
> branch-07 
Yeah Baby!  
> 
> same time as bioperl-0.7 and I'm happy to do necessary leg-work on
> biocorba stuff (Jason - what is your todo list there...?). Mark - could
> you prepare a bioperl-gui to release. I'm not sure whether these
> distributions want to branch-in-sync or just snapshot their
> trees. Thoughts?

What I understand to be the biocorba problems is most recent buglist brad
chapman sent out.  I am getting all kinds of weird problems on my laptop
that I did not see before when working on solaris.  I'm not 100% they are
not ORBit bugs 0.5.7.  If you can go through the bugs that Brad sent out
on biocorba-l and see if you can track them and/or fix them.  Perhaps the
best thing is to add a couple more lines to the testclients to test all
the methods of an object, if it passes perl<->perl I am happy to release.  
BioEnv is rumored to be failing on some of the methods. I also have not
extensively tested the BioCorba::Client code, but most of that did not
change much (since our Bioperl interfaces have not changed). I suspect the
DB::biocorba and SeqIO::biocorba might need a little extra looking at.

Whatever you've got time for would be great, I have to be away from my
desk most of the morning so I won't be able to do much until
mid-afternoon. 

> 
> 
> 
> 
> ewan
> 
> 
> 
> 
> -----------------------------------------------------------------
> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> <birney@ebi.ac.uk>. 
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Jason Stajich
jason@chg.mc.duke.edu
Center for Human Genetics
Duke University Medical Center 
http://www.chg.duke.edu/