[Bioperl-l] Alignment question

[Lluís Armengol]

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Dear all,

I am just starting with Perl and Bioperl and I don't know if this is the
right place to send my question. If it is not I apologize, if it is ...
here it comes

I am trying to get the percentage of identity between two regions of two
aligned sequences. I can align the sequences using blast2sequences but I
don't know how can I pass that information to the SimpleAlign module.
Maybe I am using the wrong program to align the sequences? Maybe I
should get another kind of report of my alignment? Is the SimpleAlign
module the right one to use?

Thanks a lot!
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Subject: Alignment question
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Dear all,

I am just starting with Perl and Bioperl and I don't know if this is the
right place to send my question. If it is not I apologize, if it is ...
here it comes

I am trying to get the percentage of identity between two regions of two
aligned sequences. I can align the sequences using blast2sequences but I
don't know how can I pass that information to the SimpleAlign module.
Maybe I am using the wrong program to align the sequences? Maybe I
should get another kind of report of my alignment? Is the SimpleAlign
module the right one to use?

Thanks a lot!

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