Bioperl: Creating a SeqIO object

gert thijs gert.thijs@esat.kuleuven.ac.be
Fri, 26 May 2000 16:12:54 +0200


Hello,

I hope this is not a stupid question, but I still haven't captured all the
gory details of perl yet.
I am developping a web interface where one can enter some DNA sequences that
will be processed. Those DNA sequences should be in Fasta format. When I read
the inputs of the web interface the sequences are stored as one long string in
a variable $dnaseq. Now I am first writing this string to a file and then I
use the filehandle to read the sequences into a new SeqIO object. 
But I was wondering if I can do this without writing $dnaseq to a file. 

tnx,
Gert Thijs

-- 
==========================================================
+ Gert Thijs              gert.thijs@esat.kuleuven.ac.be +
+                                                        +
+ Dept. Elektrotechniek ESAT-SISTA                       +
+ Kardinaal Mercierlaan, 94                              +
+ B-3001 HEVERLEE  Belgium                               +
+ Tel :  +32-16-32 18 84 ---- Fax : +32-16-32 19 70      +
==========================================================
=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
====================================================================