Bioperl: Checking DNA alphabeth
gert thijs
gert.thijs@esat.kuleuven.ac.be
Thu, 18 May 2000 18:19:08 +0200
I am writing a script to process some DNA sequences which are in fasta format.
Now I would like to check if these sequences contain other symbols then ACGT,
like N or degenerate symbols.
Is there a function in bioperl that does this or has someone any idea which
regular expression to use?
Thanks,
Gert Thijs
--
==========================================================
+ Gert Thijs gert.thijs@esat.kuleuven.ac.be +
+ +
+ Dept. Elektrotechniek ESAT-SISTA +
+ Kardinaal Mercierlaan, 94 +
+ B-3001 HEVERLEE Belgium +
+ Tel : +32-16-32 18 84 ---- Fax : +32-16-32 19 70 +
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